Research Prime

Co-op: Computational Chemistry

Organisation Name: Flagship Pioneering, Inc.
Organisation Type:
City: Somerville
State: MA
Country: United States

Job Description:

What if you could join a rapidly growing company and play a critical role in bringing new medicines to patients through looking at and treating disease in a revolutionary way.

What this position is all about:  

Implement and compare different methods for calculating binding free energy differences of ligands bound to target proteins. These methods and protocols will be applied on one class of protein targets with many crystal structures and inhibition data. Subsequently, the general applicability of the methods will be tested on other classes of targets to help identify methods most suitable for Cellarity’s projects. 

What you would be responsible for:

  • Implementation and benchmarking of protein-ligand binding energy calculation methods such as MM-GBSA/MM-PBSA, TI and FEP
  • Communication of protocols and results to the computational chemistry team

What experience will you need:

  • Ph.D. student pursuing studies in computational chemistry, structure-based drug design and/or chemoinformatics.

What sets you apart:

The preferred candidate would have demonstrated expertise in several of the following skills:

  • Molecular Dynamics and Free Energy simulations of receptor-ligand complexes
  • Sound knowledge of protein crystal structures and conformations
  • Experience in using software packages for docking (e.g. Schrödinger) and molecular dynamics simulations (eg. AMBER or OpenMM)
  • Scripting / programming skills using python

What it’s like to work at Cellarity

At Cellarity, we

  • Push Boundaries: We create a legacy with breakthrough science in service of patients.
  • Inject Energy: We build strengths from different perspectives and tell it like it is.
  • Own it: We transcend our job descriptions and relentlessly follow through on our commitments.
  • Go all out: We work quickly and with conviction.

Posting Date: Feb 21, 2023
Closing Date:
Organisation Website/Careers Page: https://boards.greenhouse.io/flagshippioneeringinc/jobs/6537439002?gh_jid=6537439002


Subscribe for receiving latest updates in Computational Sciences